Sanjay S Chellapilla

M.S., Artificial Intelligence, The University of Georgia, Athens GA
M.Tech., Chemical Engineering, Indian Institute of Technology, Kanpur

Research interests: Bioinformatics, Machine learning

For paired-end/mate-pair reads, "pre-pairing" (2008-2009) and post-assembly single-linkage clustering of contigs-singlets based on read-names (2010), has been integrated into and available in the ArthropodEST EST analyses pipeline

Applications: ArthropodEST EST analyses pipeline, BeetleBase, AgripestBase

ArthropodEST: K-State Bioinformatics EST analysis pipeline (with Yoonseong Park, Doina Caragea, Susan J. Brown)
poster (MS-Powerpoint).

"Frontiers in Arthropod Genomics": 3rd annual Arthropod Genomics symposium, Kansas City, June 2009.
"People, Tools, Projects, Networks and the Bridges Between Them":
(GPN2009) The Great Plains Network Annual Meeting, Kansas City, May 2009.
"New Insights from Arthropod Genomes": 2nd annual Arthropod Genomics symposium, Kansas City, Apr 2008.
Identifying specialized salivary gland transcripts in pea-aphid using bioinformatics tools (with D. Caragea, G. Reeck et al)
"New Insights from Arthropod Genomes": 2nd annual Arthropod Genomics symposium, Kansas City, Apr 2008.

I'm also working on genome projects: Tribolium castaneum related species, Mayetiola destructor, Manduca sexta

Recent related work:
Bioinformatics group at the SECSG (UGA), later duration of the NIH NIGMS PSI-1

Sfam: A protein-family based tool for reporting structural genomics progress (with D. Lin, B. C. Wang et al)
Protein Purification and Crystallization Workshop (PPCW), NIH, Bethesda, Feb 2005.
A Pfam-based management system for structural genomics target selection and progress monitoring (with D. Lin, B. C. Wang et al)
International Conference on Structural Genomics, Washington D.C., Nov 2004.